FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488268
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCAATC3100.005872163514.02026751
ATCTCTA3150.00652882613.7977231
CTTAAAA6405.8547774E-410.18661
CTTCTAT6300.00587719779.1984821
CTCCTTT9352.2200106E-48.5221231
CTCCTTG7700.00316508048.46678451
TCCTTTT13653.5323646E-67.9300542
CTTTCAT8750.0099749477.45077041
Produced by FastQC (version 0.11.5)