FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580751
Sequences flagged as poor quality0
Sequence length100-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGATC2000.00831620917.9690652
CTTTAAA10701.1491811E-69.4393221
CTCATTT6350.0064885799.0889311
CTGAAAT11051.757367E-58.4874571
CTCAAAA8050.0049059868.0657211
CTTTAAT11250.00168028747.054021
CAATAAA12600.0055182276.2982321
TTTAAAT15108.659473E-46.18802262
CAAAAAG16200.0019251515.7892841
TTTAATT15400.00726093865.6007472
Produced by FastQC (version 0.11.5)