FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551270
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CATGGGT2850.003485851215.1659439
CTCATAT3850.001630633513.1503421
CTTCCGA6453.7876343E-612.3348171
CTTCAAT9402.3713252E-59.2332191
CTTTCCC8200.0056598187.9383171
ATTTGAA10600.0071971436.82329131
CTTTTCT12050.0033710046.60245371
TTCTTCT16800.00300786855.5759043
Produced by FastQC (version 0.11.5)