FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences696266
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTTTGG4250.00374528211.7715636
CTCAAAC5050.001009078811.3751091
CTCAACA6200.0055428869.2652091
CCCCCCC2150.0067015316.8760276120-124
CGCTGAT10600.0077246576.77409171
CAAAAAT12809.2553656E-46.7317541
CAAAAAA18001.806692E-45.98378131
CAAAGAA14750.00455663775.84179261
Produced by FastQC (version 0.11.5)