FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2623152
Sequences flagged as poor quality0
Sequence length100-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGCGT1000.00616328728.9156789
ATCTAGT3305.0793204E-415.3463566
CCCACAC12901.3197618E-57.87988471
CTCAGCG9550.00251684857.60288051
CTCAAGT12104.304065E-47.20074461
CTTAAAC14908.875446E-56.8221821
CCCAGCT18103.354664E-66.819491
CCCAAGG12350.00420172476.4670661
CTCAAAA35305.456968E-126.37629651
GTAGGAT12500.00494786966.36654577
CTTTAAT47300.06.2936741
CTTAATT30101.3151293E-96.27174471
CTTCAAT46650.06.22572471
CTCCCCG13000.0071654626.14371251
CCACGAT18251.8826705E-45.96774051
CTTCAAC32951.6716513E-95.94962931
CCCAGAT19557.510759E-55.9423031
CTGTGCT21557.587512E-45.7785983145
CAATTGG15100.00524118455.7701331
CTTTCGT23302.697841E-55.60916381
Produced by FastQC (version 0.11.5)