FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences963197
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGAAT6305.085242E-410.3458061
CTTGTCT7954.19178E-49.1095151
CTCCAAG7300.00195909438.9285731
CCTCATT9001.4758174E-48.8514111
CCCAAAT8700.0010284688.3242111
CTCCGTT8150.0053025697.9973711
CCCAGAT8200.00560207667.94860651
CAACAAT14951.2230794E-57.2662851
CTTCAAT15201.5441841E-57.14677331
CTTCATT16705.737759E-56.50484751
CCTTGAT12250.0039584816.5030781
CCTTCAT13950.00222400466.22973251
CATCCTT12800.0062561296.2236491
CTCCTTT19951.5779817E-56.1711821
TCAAATA13050.0078208016.0911092
CATTTCA14350.00313018266.042565
CAATGAT15750.00131575945.97757631
CTTTCAT19406.951186E-55.9728361
TTGAATT14750.00425078165.87899882
GATTTCC16250.00196380525.78071555
Produced by FastQC (version 0.11.5)