FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1468519
Sequences flagged as poor quality0
Sequence length100-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCAAAT8650.0091747367.52297351
CTTTAAA10400.0060172756.95232061
CCCAAAA10650.00757284236.789121
CAAACAA15852.0946862E-46.3864851
CCTCAAA13600.00170327296.37977651
GTTCAAT14756.0913234E-46.3725671
CTCAAAG14150.00265925056.13179971
TCAATAT20703.0340016E-55.91476773
CTTCAAG19809.575109E-55.8427581
CTTTTGT18150.00119023265.5771781
CCCGCAT15650.0081452085.5440871
CCTCGAA15900.0096962385.45691541
CATGAAA17950.00632571485.2365111
ATACAGA18000.0068476415.20116236
CTTTGTT18450.0087191375.09461
Produced by FastQC (version 0.11.5)