FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1897627
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCCTGG5200.001205477511.1376841
CTAAGAT8700.0095538547.48913241
CTCAAAA26658.367351E-117.06292151
CTCAAAT15552.1402175E-56.98343561
CTTTCGA15752.5589461E-56.8947571
CTCATGG14003.181477E-46.7223881
CTTTCAG31651.03682396E-106.40460871
CTTTTAT35404.0017767E-116.13516471
CTTAAAT15550.00113534086.0523111
CTCAATT13250.0089923436.0101461
CTTCGAG18251.9583518E-45.9502691
CTCCAAC16000.00159826855.88208871
GAACGAG16000.0016380935.8699965
CTTTAAG15300.0062610925.67803531
TAAGATT21756.149505E-55.64711952
CTCCGGA18500.00149254075.4785361
GAAATTA24004.6763842E-55.4184585
CTTTTAA25702.3400264E-55.35215571
CTTTGAG18950.00202051975.3484391
CTTCAAA31207.179424E-75.33680731
Produced by FastQC (version 0.11.5)