FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1240919
Sequences flagged as poor quality0
Sequence length100-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAATTGT7700.00370851868.3216361
CCCAGAT10050.0050126057.08420131
CTCCGAT10350.0066677666.87886141
CACCGAT12050.00398522246.499241
TGTTAAT12000.004037936.49108277
CCAGAAT13150.0098735285.95557741
CTCAAAA15700.00155475835.89522841
CAACAGA14750.0050176215.7922351
AATCTGC16400.00278857125.61313155
CTTTGAT21250.00189406755.02561571
GGTATTT19900.00458186035.00877951
Produced by FastQC (version 0.11.5)