FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1181336
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACACGT3556.1536084E-515.8315037
CCGTTAG2750.00325095515.3277743
CTGAATT10309.492E-58.2055751
GACTTGC8200.0073595797.71061855
AGCACAC8300.0082022217.6177195
CTTTATT16300.00276426045.6172111
GAAAGAT19155.4545107E-45.5168031
CATCAAT18650.00233307325.28705931
Produced by FastQC (version 0.11.5)