FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1199557
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGACCC5950.00388843949.6732787
CATGCAT8100.0051078588.0310471
AATAGGA9600.00289508427.4942717
GTTATTC9950.004080677.2354792
CTCCGAT10500.00662165376.8837541
CTCCATT11900.00298361746.6812911
CCCAAAG12800.0063873566.21151261
ATATTCA25203.0853153E-65.70992046
CAATATT19300.00274145145.2194614
AAACTTT18100.00737632165.1679674
CAAAAAA33756.441369E-75.139871
CTTTTGT21350.00165016555.07817941
AAATCCA19850.00389296335.0748414
Produced by FastQC (version 0.11.5)