FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2330182
Sequences flagged as poor quality0
Sequence length100-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCAAG17451.0752212E-46.21664431
CTTGGCT14100.00255125626.15491871
CCACAAA23204.26358E-65.92278241
CTCAAAT17406.944976E-45.81887441
CTCCGCT22601.7630367E-55.7600231
GGCACAT18300.00131845315.53271
ACAAAGT20952.287277E-45.4994463
AGATCTT18450.00154383935.464054
GTAGAAA20207.8435184E-45.3703191
CTAAAAT18900.00198070295.3570591
GGACAAA25902.7098999E-55.305351
AACGATT19350.00275224945.2184182
CCCGGTT18050.0067383365.20866351
CACAAAT18650.0098664715.0410931
Produced by FastQC (version 0.11.5)