FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences683476
Sequences flagged as poor quality0
Sequence length100-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATACTGT4300.00405592111.6466578
CATACTG4350.0044215911.5127873
CTTGGAT4450.00512230611.28793051
AGTTTCC4750.00850748410.5432885
TCAATGC7550.00296731648.5283933
TTTCCCT7850.0042188178.2024689
CAAAGAG8350.00715084237.7345021
CTCCAGA8400.0075433217.68846231
ACAGAGT2400.0022391016.867041130-134
TATTTCC10700.0087604896.6863325
Produced by FastQC (version 0.11.5)