FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005007979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005007979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences664059
Sequences flagged as poor quality0
Sequence length100-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAA3250.00807980413.3613121
CTCAAAT4503.5809033E-412.8664471
CCCAGAT4755.648214E-412.1892671
CTTACCG4550.00567204211.1344271
GTAAGAT4850.00911402210.4456991
CTTGGAA6405.9088063E-410.1775611
GTTTAAA7400.00222802938.8022161
CTTGAAT8600.0086249847.5739991
ATTCAAT12951.2217148E-47.26532031
TTCTGTA10400.00620462476.92914444
TTTCTGT13200.0090472486.00525863
CTTTTCC18050.00109292835.6134781
CTTTTAT15850.0092472015.47940251
Produced by FastQC (version 0.11.5)