FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences930797
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTTCTA4700.007027367610.8189841
CCCACAT6250.005386219.2981431
CCCATGT6450.00697805879.0098291
CCCAAAA8900.00124953358.1619941
CTTTGGA9650.00277039017.52764231
CTTTTGT13702.9108089E-57.42324451
CTCAAAA13401.7807656E-47.04733321
CAACAAT13552.0417217E-46.96931841
CATTTCT14657.430584E-56.9138733
CTTTTAT14808.053991E-56.87151671
CTTCCGT11650.00226299846.85887771
CGTCAAT10950.0094578836.63394931
CTTTAAA12350.004174016.47011471
CTTCAAA17306.081675E-45.87852241
CTCCGCC16800.00273971755.6210871
CGCTTTT15950.0095256515.465211
CAAAAAT23451.7575224E-45.26613951
CTTTTTA18500.0085127875.10455561
Produced by FastQC (version 0.11.5)