FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5239806
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTAGAT13450.00157559056.4248121
CTTACAC19106.044498E-56.03237151
CCTAAAT22401.639564E-55.7866331
CTTAACT16900.00326829055.53934051
CCTACTA17500.0049323245.34942051
CCTCAAC29851.9323797E-65.3073751
CTATGGG19500.0032066935.155358
GGTAGAT32151.450102E-65.1516731
GTTACGA28352.3915967E-55.0801711
GGTCCGC18450.0091545135.0739761
CCTTAAC20050.0043760085.0282291
Produced by FastQC (version 0.11.5)