FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2004213
Sequences flagged as poor quality0
Sequence length100-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTAATT9302.1787662E-48.5401341
CTCAAAT14155.884449E-67.6540231
CCCAATT9900.00377895787.29322771
CAACAAT23451.1800512E-76.4659361
CCCCGAT12850.0067300376.18079761
CTTCATT23458.055904E-76.15803431
CTTCAAT26451.7760067E-76.0055391
CTTGAAC20953.510728E-55.85895061
CTCCGCG21254.3612064E-55.7762361
CTCCAAA18250.00129969955.53885651
CTTTTAT24901.44287205E-55.5094631
CTCCGTT18100.00709178765.18584731
AGAATTT28202.17707E-55.1072333
CCCGCCC19950.0039744525.0668741
Produced by FastQC (version 0.11.5)