FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2562089
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAGCTG10358.530037E-58.2821268
CTCACAT9854.399969E-48.0013751
CCCGACT9550.00286691367.50247961
CCCAGCT19701.5380567E-56.18288041
CCCTCAT14650.0043411835.8688331
AATTTAG24551.3599454E-55.52920155
CTCCGTT21403.3253987E-45.356911
CTCAAAT19000.0023798985.27937651
GTCTGAT20450.0010475895.25540451
CTTTAAG23201.8460733E-45.25011871
CCTCATT19300.00298268675.1850332
GTTAAAT24103.255564E-45.0540561
Produced by FastQC (version 0.11.5)