FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences746283
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAGGGG1800.00534752719.3986688
CCCTGAT6307.0271903E-49.9878351
CTTAAAT7152.0573658E-49.77831
CTCAAAT6000.0052718349.32197951
CCAAGAT6450.009543558.6716091
CCCAAAG7300.00269532418.6196381
CTTATAT10450.00107295897.35945751
TATCTGC11000.00186630616.98492535
AAGATTC10100.00632408086.9157675
ATTAAAG10150.00663391176.88169962
CTTTAAA12000.0046069036.40886071
CTTTATT17400.00106472315.62533241
Produced by FastQC (version 0.11.5)