FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences904847
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCACCT4200.00333313511.9571161
GTTCTAT7954.217214E-59.9266631
GTTCAAA9352.470199E-48.4403171
GACATTC8900.00144981068.0400415
CTTCGGA8600.0093328727.5079571
CTTTGAC9800.00363824947.3206841
GTTTGAT10050.0046505147.13857751
ATCCGCT10750.0089276876.673741
AAATCCT14850.0050783965.78552964
CGGAAAT16550.00265814575.63537841
Produced by FastQC (version 0.11.5)