FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2087240
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCCCTA8350.0073065477.7174078
CCCACAG12609.804046E-57.3979751
CTTCGGG19451.7659677E-66.63579461
CTCGAAA14304.6310326E-46.5184951
CCCAGAT20353.7055597E-66.34231951
CTCTCAT12500.00542922836.30990361
CTCGCCG26701.5213845E-65.6395971
CAACCGG20351.6031323E-45.6376171
GTTTAAA15600.00862445.51564931
CTTTCAG36654.7130015E-95.47802641
CTTCAAT29902.159395E-65.2758391
CTTCTAT22456.473976E-45.11026761
Produced by FastQC (version 0.11.5)