FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423400
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAATAG1050.00782157727.5330451
CCGAAGT4050.002397673212.4918451
CAAGCTT4400.004673062411.4261083
CGAACAG5100.001104188711.2514435
GCAAATC5200.001284745811.0494232
GCGTGGG2550.0045288036.420641130-134
Produced by FastQC (version 0.11.5)