FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1056989
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAAGTA1950.006988216718.5211853
CTTTAAC6850.00109105289.5206011
CTCAATT6200.0051461749.3499821
CGATTGA7250.00188474928.9668084
CTTCTAC9452.4888426E-48.4347721
TCGGTCT9854.026623E-48.06658653
GTTAAAA9800.0033014377.39411831
CTTCGGA12456.0927053E-46.98432351
CTCAAAA12909.1300695E-46.74068451
CTTTGAT15007.2639174E-46.28007131
CTTGAAA19105.5002653E-56.07014561
AATTCAA15250.0061961425.6828035
TTCAAGA17050.00349081565.5074732
Produced by FastQC (version 0.11.5)