FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2649190
Sequences flagged as poor quality0
Sequence length100-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTTTAG10850.0091669356.6564881
GACCAAT16354.624779E-56.60819536
CTCAACT12200.0039090576.5119011
CCCCAGT12600.0054731026.3051741
CTTTAAT21508.060537E-66.0465681
AGATCCA17558.1588514E-45.74592924
CCCCCGG17350.00430330085.4115141
CTCCGTT27351.2175147E-55.2813821
CTTTTTT60550.05.24823671
CTTTGGA28602.6422475E-55.0505521
Produced by FastQC (version 0.11.5)