FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2453552
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTAGAG6450.00751419558.929971
CCCAAGT12350.0045880636.4127671
CCCCGAT13000.0078189636.09212881
CATAGAC15650.00131034625.98065471
GTATAAT24751.3684265E-55.527111
CTCCGAA22651.1971785E-45.4038151
CCCAGCT20057.536542E-45.38637541
AGAGATT22901.4703075E-45.33042862
GTCAAAG28906.0291004E-65.23168041
CCCGATT18150.00757362655.15687271
CACCGCT20950.00135441435.15497971
CAGAGAT18200.007820785.14270541
TACGGGA19550.00330983035.14197542
GCCGTTT35603.9262522E-75.0560311
Produced by FastQC (version 0.11.5)