FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1058864
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCACAAT8951.32311725E-59.7022441
GTCTTAT8508.2325254E-48.5132441
CTCCAGA9853.949515E-48.08109951
CCTTCGC8200.00564348937.9422331
CTTCGGG11652.8896928E-47.45365571
CCCATTT10709.577376E-47.4391431
CCAATAT13051.348542E-47.2085321
CCCGAAG12355.6445965E-47.0311811
CTTCAAG13552.1414715E-46.9425341
CTTCATT18957.211851E-66.49162861
TCAAAGC14000.00247206596.1714573
GTTTGAA15600.001184716.03021431
CTTTTAA13150.0087983326.02227265
CTTCAAA17758.868521E-45.707471
CTTCCAT20601.6713435E-45.62039381
CTTTCAG21202.5198478E-45.4613261
Produced by FastQC (version 0.11.5)