FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1025040
Sequences flagged as poor quality0
Sequence length100-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACACGT3708.487835E-515.24597557
CACGTCT3759.517137E-515.0426959
ACACGTC4454.0634215E-412.6764298
GCACACG7452.4977562E-510.4107536
AGCACAC6356.99589E-49.9934295
TGTAGGT5850.0039904569.6427548
AGAGCAC5850.00399367379.6418133
CAACTCC9400.0067635889.043526145
GAGCACA7200.00220406618.813654
GTTATAT7700.00394597658.2643151
AGATTTT15950.0090716926.662159145
AATTCAA12150.0048052886.38354875
GATTTTG17750.00123273275.5612895
CAGTCAC3850.00342550625.128141420-24
ATATTCT20650.00147262485.1217336
Produced by FastQC (version 0.11.5)