FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3335256
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCCAAT14957.003588E-46.30017381
CTTCAAA63400.05.9424351
CTCATAC19658.344413E-55.89939981
CTCAGAA21254.142643E-55.796161
CTCAAAC26501.094013E-65.74147941
CTACGAA15350.00643879975.6641
CCCATTT29602.4708243E-75.6297171
CCAAGAT27452.0965945E-65.5427761
ATCTTAC21252.701864E-45.4358256
CCCAGCT23451.8350522E-45.25238371
CTCCCAA19550.00295966865.1883791
GTTTCAT42053.4542609E-95.1689891
CTTCGTT28452.2856315E-55.09328651
CTCAAAG35703.649966E-75.07366941
Produced by FastQC (version 0.11.5)