FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2760116
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGAAT9450.00242531497.6316841
CTTTAAA31201.8189894E-126.9345591
CCTCAGG12250.00414155336.4760291
CCCACGA13450.00154840996.43444541
CCCACAC15701.9164431E-46.431031
CTCAAAT20955.41822E-66.19641731
CCCGAAT14000.00243064746.1816641
CCTACGC12850.00681357746.1736461
CCTCGAT27908.1994585E-85.94532781
CTCCGGT28005.493639E-75.66652541
CTCTGAA24751.3306826E-55.536441
CTTACAA23453.3288365E-55.53581861
CTTGGCT18450.00151445015.4724751
CTCCAAT17800.0059135925.2671481
GATTCTG36953.2014214E-85.243355
CTTCAAA42751.0841177E-95.22971151
TATAAGG19250.00275148525.21863377
CTTTAAG23652.230962E-45.18405871
GAATACT21300.0017646325.05325466
CTTCGTT21500.00186786375.0315871
Produced by FastQC (version 0.11.5)