FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1367994
Sequences flagged as poor quality0
Sequence length100-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTAAAT7000.00139698859.2668731
TCATGAG6600.00927753658.7025732
TTCGATT11101.8113691E-47.7617542
CTTCACT11151.8241818E-47.7570241
CTGTGAT9300.00208343297.75007341
CTCTGAC8700.0099343057.4561051
CACGAAT9800.00348017487.3546611
CTTCAGG15051.1123217E-46.70471431
ATTTCGC18455.443846E-66.61053476
GAAGGAA14204.1822335E-46.5728942
CTTCGAT16505.1946325E-56.5523351
CTTTCCA17850.00100265065.6529941
TTTACGC21907.579552E-55.56935267
AACCTGG17850.00648938635.22503386
Produced by FastQC (version 0.11.5)