FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1313352
Sequences flagged as poor quality0
Sequence length100-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAGGA7450.0023738938.7422341
CCCACAT8750.00109732728.2704311
CTCAATA10300.00543248757.02585271
GTCAAAT11500.00205633236.92199131
CTTGAAT13650.00175769296.36187031
CTTCCCA12900.0068401076.1707681
GTTTTAA16000.00160464675.879761
CTTTGAA26155.3482054E-65.5347061
CTCTTCT15800.0089597965.4961731
GTTTGAT15900.009603155.4616061
CTATAAT17650.0051375865.33009431
CTTCCAT24807.6430224E-55.2523911
CTTTGAT24503.5782342E-45.02133371
Produced by FastQC (version 0.11.5)