FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1199138
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTAGTT3900.001780769212.99943351
CTCAGCT6354.326149E-511.4055771
GAGTGCT5750.00286379410.0375019
CTCACAA6607.798588E-49.8761941
CTCAGAA7803.4633093E-49.285311
CTTCAAT17855.711627E-108.52063751
CTCATTC8659.952039E-48.3522512
CTTGTAT11954.4774788E-57.87891631
CTCAAAT11251.9119614E-47.7253781
CCTCATT11402.2283276E-47.62372831
CTTTAAA17352.2405948E-77.5138771
CTTGTAG11703.0065907E-47.42824841
CTCCATT13451.9353526E-47.00022651
CTCCGTT10500.00649351636.8976591
CCCAGCT11550.00213373066.8976591
CTGTAAT16304.098702E-56.6649161
CTATTTT20655.635975E-76.663841
CACAAAT10850.0091473866.65731673
CTTCCAA12000.00318917126.63899661
CACAGAT12100.00347896556.5841291
Produced by FastQC (version 0.11.5)