FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1705655
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTAGAT5350.001550984610.80637551
CTCTAAT6700.0099468178.6289721
CTTAAAC8900.00131636258.1199591
CTCAATT11452.4053929E-47.5739011
CTTAAAT16357.261606E-77.5140671
CTCCGCT13652.9753643E-57.41206551
GAATAGC11750.00269201516.74743136
CTTTGAT29109.640644E-116.7052451
CCTATTT12959.846545E-46.69661571
CTCTTCT19701.9138497E-66.60313461
CTTTTGT31004.3655746E-106.2942781
CTCAACA15259.171307E-46.160521
CTTTTAT34651.5825208E-106.04837371
CTCCCGG14350.00312992236.0432871
CTCTCTT16050.00169395785.8534531
CCTCCAT18900.0049121675.803426145
CTTCTGA21705.9144095E-55.661521
CCATGGA15550.00763400465.5769241
TTGATTG19705.857756E-45.48809243
CTATATT20700.00109750235.23678541
Produced by FastQC (version 0.11.5)