FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1958166
Sequences flagged as poor quality0
Sequence length100-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCTAA8900.0013001398.1302921
CTAAGAT10100.00449606037.16431671
CTTCAAT35800.06.872141
CCCGCTT12959.7075495E-46.70513631
CTCTGTT17551.6311873E-56.5968861
CTCAAAC15108.018654E-46.2296341
CTTAAAG18704.1349776E-56.1911951
CAGAGAT16503.4888482E-46.13960171
CTTTAAT37002.1827873E-116.062561
CTCTTCG14750.00419398445.88688231
CTAATAA19859.8289194E-55.83251141
CTCTGAT15150.0056448755.7314531
CTTAAAT23202.6581061E-55.61410671
CACAAAT20701.7962168E-45.5930121
CTCTTAT18400.00140244895.50562141
CTTTTGA41051.9263098E-95.28815561
CTCAAAT17950.0062724855.2405271
CTTCCGA18100.00691411925.1970981
CTAAAAA33102.3334414E-65.0280081
Produced by FastQC (version 0.11.5)