FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1328799
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTAGAC2252.7654614E-522.4339711
CTTAGTT3052.858049E-416.5496521
CCTAAAC4000.002226346612.6191091
CCCTATT4850.00937299810.4075131
CCCAGAT10004.6080459E-710.0952871
CTCACTT5800.00308964829.9460951
CTCATTT11904.8396032E-89.69535351
TTAAGAC6250.0059221489.19210152
GTCACGA6500.0079005528.8749771
CCCTATC6550.0084124588.807231
CCCAAAT10256.814982E-58.4420521
AGTGAAT9653.2904724E-48.2197011
CTCATAT11502.927994E-58.1514741
CTTAAAT10651.065138E-48.124981
CAACGAT11553.0914296E-58.1161861
GTCTTGT9000.00150155468.0121331
CTTATTA11502.5929563E-47.52443741
CTCCAAT11150.00154024137.11391161
CCTATAT10250.0053640327.03504321
CTTTGAT20901.0255644E-76.9004011
Produced by FastQC (version 0.11.5)