FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences621336
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAGCT3304.8732746E-415.4270961
CTATCGG3350.0095563413.0258641
CTCTGAA4856.45809E-411.9963271
CTTTTAG4600.00593256511.0672651
CTCCATT6254.5392977E-410.4727951
CTCATTT7953.6251273E-510.0629581
CTTTAAA10356.946055E-69.1348851
GAAATAG9600.00280486967.51727725
CTTTCAT12254.845797E-47.124351
CTTTTAT13752.4039828E-46.8760771
GTTCTTT11650.00223196746.8669971
CAAAAAG16959.00172E-66.8651551
CTTTTTG15851.9348666E-46.4239011
CTCCTTT13100.0076032186.10690931
Produced by FastQC (version 0.11.5)