FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences594130
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC2558.57105E-519.3668488
CACGTCT2558.57105E-519.3668489
CACACGT2207.0876576E-419.241097
GAGCACA3458.584929E-414.3170384
AGCACAC3100.00698879513.6572665
GCACACG3850.00196395112.8295546
TCAGAGA4450.005804216511.0997263
TCAAAAG10600.0091377566.6568442
Produced by FastQC (version 0.11.5)