FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences787885
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAGGACC3250.00957100113.0234753
CTTTTAG4200.003705433811.7887271
GTTTAAT5400.002002049210.47886851
ATTCACC7252.1624732E-49.7301826
CGTCTTG6100.00561152969.2516493
CCGAGAT6350.00763562148.9111631
CATTCAC6450.0088702168.7496215
ATTCAAC8156.9757E-48.65568356
AGAATGA11500.00268649246.74766974
Produced by FastQC (version 0.11.5)