FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1257850
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTTGAT11450.00257959436.77452951
TTCAACT10550.008996146.6688982
CTTTGGA15452.079474E-46.38986251
CCCAGCT12550.0067258346.18074661
CTTCGAT15000.00100916586.1114471
CTTTTAT20907.4872587E-66.07320831
GTCCTTT12950.00930634055.98983571
TAAAATT20503.7365782E-55.8344722
GTCTTTC16150.002512125.6627264
CTTTAAT14950.0064779245.66020351
GGCTAAG3450.0050033535.342962795-99
AAAATCT22207.23042E-45.0697583
TTAATAT18050.0093012985.0662473
Produced by FastQC (version 0.11.5)