FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1388491
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTGGAT8458.542721E-48.4820171
CCCAAAG9000.00159425517.9636711
GAACCGA9600.0031496137.4301824
CTCCAAT10300.0059647746.95854761
CACATCG16052.9277755E-46.2232543
CCTGAAC15159.35499E-46.15016171
CTCCATT13050.0085190046.0414061
ATAAAGG17508.901666E-45.70617446
CTTTCAT20802.2034385E-45.5133111
TAATATA17300.00481070865.3600394
CCCGCCG21653.8964898E-45.2968531
Produced by FastQC (version 0.11.5)