FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences897120
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCTAA3750.001268615113.5972181
CTCTAAA3900.001704898213.0742471
GTGGAAC6400.00639911839.1052791
CTTTTAT20557.943527E-97.4437321
CTTTAAT11700.00229941546.8484151
CTTTGAA15451.3622074E-46.60059071
CTTGAAG13450.00138044766.4989351
CTTAAAA17551.05043524E-46.2258321
CTTTGCA18051.5444972E-46.05337141
CAAAGAA19406.387358E-56.0076071
AAATTAA14900.0049013995.8040374
CTTTATT16500.00213984685.7390851
TTAAAAT21503.2602585E-45.36311052
ATTTAAA18600.0099411295.03692676
Produced by FastQC (version 0.11.5)