FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences977149
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCTAT6103.7360593E-410.6973381
CTCCGAT7350.0020628178.8780621
CTTTACT8750.00107621568.2861921
CTCAAAT8000.00444029748.156721
TAAGATT11600.0022560546.86096952
CTTCAAT16203.7029506E-56.713351
GATTTAA13350.00136981036.5035555
AGATTTA14950.00487006875.80752234
CAAAGAT15200.0057186045.72401431
AAGATTT21000.00130649735.16800363
Produced by FastQC (version 0.11.5)