FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2063204
Sequences flagged as poor quality0
Sequence length100-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGCGC6600.00921283858.71041
CAGGTTA12500.00544521036.30811455
CCTTCGT12800.00678998376.1755371
CTTTCAT39503.6379788E-126.003561
ATTTTAG21305.053554E-55.72063356
CTTAAAT23052.6768765E-55.61168861
CTTTTCG25905.119653E-65.5490961
CTTTAAT31501.7494858E-75.47510861
Produced by FastQC (version 0.11.5)