FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1338959
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCGAT10701.49748175E-58.5984471
CTCGAAT7650.00369103078.3260981
CTGTGAT9550.0032314747.41066361
GGAAGCT13402.4551948E-46.86592441
CTTCGGA14606.974115E-46.3016021
GTTTGAT15300.0080370415.5507321
CCTTCAT22701.5989131E-45.30009371
CCTCTTT17750.00712739355.18328951
TTCATTG17850.00765413465.1517482
ATCAAAT24801.08544904E-45.13666531
TTCAAGG18250.0099085285.03883362
Produced by FastQC (version 0.11.5)