FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005008962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005008962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences927088
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACTTAA4700.007307320410.7622346
CTCATTA6000.00390222539.6687011
TCGAACA6350.00640860949.1037133
TTCGATT8105.145447E-48.924452
CTTCAAT13603.4407822E-78.5312061
CTCAAAG9803.6539682E-48.1394681
AAGACTT9300.00203007677.76996954
CTTTCAA15151.7638704E-67.6583771
ACATATT12356.933081E-57.60639144
CTTTAAA12901.1386544E-47.3077391
CTTCAAC10150.0046142537.144361
CTTCATT14959.403088E-56.79072571
CTCTCCG11750.00252188286.78866241
CTTCAAG12150.0035834836.5651671
CAATGAT13100.007847146.08906751
AAACAAT15700.0081609875.54256731
Produced by FastQC (version 0.11.5)