FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009001

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009001
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences880890
Sequences flagged as poor quality0
Sequence length100-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCAAAA9301.7062506E-59.4956671
AGTGAAT7450.00203679788.890241
CCCATTT9200.00152460437.9990681
CCCAAAG8400.00602120167.8847951
CTCAAAA12254.9924158E-57.80970241
CTTCAAA15953.0594547E-67.3822111
CATAGAA10450.00530658247.0422421
CTTTAAA14403.6654275E-46.64367061
CAAGAAT15106.524624E-46.33568571
CCCCCCC2950.00281563916.101273140-144
CTTTTCT21850.0017646455.0520431
Produced by FastQC (version 0.11.5)