FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences645995
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGCAGT2600.002236367716.2105779
CCAAGCT4350.005059268311.3065533
CTTCGCC7452.8267916E-49.4737031
AATATAG8500.00110194378.2654965
CATCAAT12659.84172E-46.69525051
CTTTTTT23159.538035E-76.0975461
ATGAAAA23102.1540368E-45.1941331
GGAGTGA4300.00188797895.0275836100-104
Produced by FastQC (version 0.11.5)