FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1247255
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCAAGT3800.001455700613.352131
CTTTAGT4654.6673254E-412.4701921
CCCAAAT6505.4445783E-511.151231
CCCAGCT11001.4855505E-79.8840441
CTTCAAT17101.8189894E-129.7491751
TTAACTT6600.0087867918.7604533
TTTGATC11402.2831823E-47.60776232
CTCCCGC12457.383585E-57.56850531
CTTTAAG11350.0017597667.0247831
CACAAAG13802.6264664E-46.8281081
CTTTTGT19501.09616885E-56.31903031
CTTCCAC18503.442611E-56.26879931
CTTTAAT16450.0021913065.72813941
CTTTCAT19554.895016E-45.56135461
CTTTGGC15800.0088013755.50503731
ATTGCAG20157.657877E-45.37931638
CTTCAAA21550.00179902525.045221
Produced by FastQC (version 0.11.5)