FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3639354
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTTAGG4250.00392088811.7017886
ACCCCTA8459.319342E-48.4088024
CCCAATT18551.2507371E-87.73782441
CACACGT10750.00110058947.3437351
CTTTAGT14507.238347E-56.9293551
CTTAAAT25903.929017E-106.92744451
CCCCAAT18405.203854E-66.6307691
CTCACCT18706.694054E-66.5243931
CTCAGAT16756.800333E-56.4270141
CTCAGTT14656.1466673E-46.36852031
CTACTGG12450.0051610346.3409761
CTTAAAG26753.8440703E-86.17073441
CTCACAA16303.3169065E-46.164151
CTCAAAA43100.06.16108561
CCTTGAT47650.06.0246231
CCCCGAT22753.4852892E-65.99383831
CTCATAG27909.061296E-85.91638471
CCCAGAT33252.7266651E-95.82780361
CTCCCGT23757.223147E-65.7414661
CTCCAAT31352.7186616E-85.7231521
Produced by FastQC (version 0.11.5)