FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1235240
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCAGGA7800.0038685938.282751
CTCCAAT10300.0058749946.9693041
AAGATTG15058.9924206E-46.1702245
CCAGAAT15550.00125582956.00122071
CGAAAAT16600.00273891825.6216261
CTCCGCC16750.0030471945.57128241
ATTAAAG15550.0082154585.53958851
AATTTTA23402.1911673E-45.189525
Produced by FastQC (version 0.11.5)